PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19732A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LSD
Protein Properties Length: 63aa    MW: 6734.84 Da    PI: 9.5402
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19732AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1352.4e-11730124
                    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                               Cg C+ +Ls P GA+sVRC+lC++
  Oropetium_20150105_19732A  7 CGRCGEYLSVPSGARSVRCSLCHA 30
                               **********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-8634IPR005735Zinc finger, LSD1-type
PfamPF069436.7E-10730IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MAPRTMCGRC GEYLSVPSGA RSVRCSLCHA ATRVERRPHH NGLHPSAVGF IRGLIGSILL  60
DY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152418.13e-17putative metacaspase family protein
TrEMBLA0A0A9G1701e-18A0A0A9G170_ARUDO; Uncharacterized protein
STRINGGRMZM2G120069_P019e-17(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39422